RNA Editing Plus

Prediction of A-to-I RNA editing effects on mRNAs expression and splicing.

Required columns of the file containing the list of editing sites (LESS THAN 10 Mb):

  1. Column 1 (Region): The name of the chromosome or scaffold
  2. Column 2 (Position): The starting position of the SNV in the chromosome or scaffold (1-based)
  3. Column 3 (Strand): Strand (+/1 or -/0)

[Optional] Providing gene expression data for more accurate prediction:

To get a more accurate prediction for UTR editing's effects, you can provide us a gene expression data via Cufflinks. And this file should not be bigger than 10 MB.

Requirements for RNA-Seq Data:

  1. The url must be a direct download link (no redirection, no authorization...);
  2. Seq files should be compressed by gzip;
  3. Each seq file should be less than 5 Gb.

(Since the whole job might take some time, we will send you the jobs' result to this address when it finished)
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